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Combinatorics of Genome Rearrangements$
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Guillaume Fertin, Anthony Labarre, Irena Rusu, Eric Tannier, and Stéphane Vialette

Print publication date: 2009

Print ISBN-13: 9780262062824

Published to MIT Press Scholarship Online: August 2013

DOI: 10.7551/mitpress/9780262062824.001.0001

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PRINTED FROM MIT PRESS SCHOLARSHIP ONLINE (www.mitpress.universitypressscholarship.com). (c) Copyright The MIT Press, 2021. All Rights Reserved. An individual user may print out a PDF of a single chapter of a monograph in MITSO for personal use.date: 28 July 2021

Paths and Cycles

Paths and Cycles

Chapter:
(p.161) 10 Paths and Cycles
Source:
Combinatorics of Genome Rearrangements
Author(s):

Guillaume Fertin

Anthony Labarre

Irena Rusu

Eric Tannier

Steéphane Vialette

Publisher:
The MIT Press
DOI:10.7551/mitpress/9780262062824.003.0010

This chapter discusses the modeling of a genome with several chromosomes by a set of paths and cycles. The model captures all the information about the order of the genes and their partition into chromosomes. The discussion covers genomes; breakpoints; intervals; translocation distance; double cut-and-joins (2-break rearrangement); k-break rearrangement; fusions, fissions, translocations, and reversals; and rearrangements with partially ordered chromosomes.

Keywords:   genomes, chromosomes, breakpoints, intervals, translocation distance, double cut-and-joins, reversals

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